I am a postdoctoral associate at MIT, in the Nuclear Science and Engineering group. I recently completed my PhD in Physics at the université Paris-Saclay (2024).
This github regroups the different methods that I try to develop for interactive and user-friendly data visualisation and analysis.
These project support the analysis of data collected at synchrotrons. I believe that developing data analysis methods that can be used remotely on dedicated clustering resources are the future of data analysis at such facilities, which is the work I try to develop.
The broad public that synchrotrons receive also calls for the development of user-friendly Graphical User Interface. I also am a strong believer in open data and reproducible science, which is why I try to push for communities to work together.
I also wrote my thesis in LaTeX, and still use Beamer for presentations. Feel free to ask me for beamer templates for MIT/Saclay.
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Thorondor: software for fast treatment and analysis of low-energy XAS dat. Simonne, D.H., Martini, A., Signorile, M., Piovano, A., Braglia, L., Torelli, P., Borfecchia, E. & Ricchiardi, G. (2020). J. Synchrotron Rad. 27, https://doi.org/10.1107/S1600577520011388.
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Gwaihir : Jupyter Notebook graphical user interface for Bragg Coherent Diffraction Imaging. Simonne, D., Carnis, J., Atlan, C., Chatelier, C., Favre-Nicolin, V., Dupraz, M., Leake, S. J., Zatterin, E., Resta, A., Coati, A. & Richard, M. I. (2022). J. Appl. Cryst. 55, https://doi.org/10.1107/S1600576722005854
Here is a link to a poster that presents Gwaihir:
Poster_Gwaihir.pdf
carnisj/bcdi: v0.2.1
Jerome Carnis; clatlan; David Simonne; Steven Leake; Dmitry Dzhigaev; Kadatatlu Kishore; Maxime Dupraz; DeepSource Bot; Karthikeyan Singaravelan; Marie-Ingrid Richard https://zenodo.org/record/5741935
Here is a link to a poster that presents the software, and most importantly, the international collaboration between different institutes:
The_BCDI_collaboration_poster.pdf
- Nelson, A. R. J., & Prescott, S. W. (2019). Refnx: Neutron and X-ray reflectometry analysis in python. Journal of Applied Crystallography, 52, 193–200. https://doi.org/10.1107/S1600576718017296
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Favre-Nicolin, V., Leake, S., & Chushkin, Y. (2020). Free log-likelihood as an unbiased metric for coherent diffraction imaging. Scientific Reports, 10(1), 1–8. https://doi.org/10.1038/s41598-020-57561-2
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Favre-Nicolin, V., Girard, G., Leake, S., Carnis, J., Chushkin, Y., Kieffer, J., Paleo, P., & Richard, M. I. (2020). PyNX: High-performance computing toolkit for coherent X-ray imaging based on operators. Journal of Applied Crystallography, 53, 1404–1413. https://doi.org/10.1107/S1600576720010985
- Martini, A., Guda, S. A., Guda, A. A., Smolentsev, G., Algasov, A., Usoltsev, O., Soldatov, M. A., Bugaev, A., Rusalev, Y., Lamberti, C., & Soldatov, A. V. (2019). PyFitit: The software for quantitative analysis of XANES spectra using machine-learning algorithms. Computer Physics Communications, xxxx, 107064. https://doi.org/10.1016/j.cpc.2019.107064