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DecodeGenetics

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  1. graphtyper graphtyper Public

    Population-scale genotyping using pangenome graphs

    C++ 162 20

  2. Ratatosk Ratatosk Public

    Hybrid error correction of long reads using colored de Bruijn graphs

    C++ 93 7

  3. svimmer svimmer Public

    Structural variant merging tool

    Python 43 9

  4. BamHash BamHash Public

    C++ 36 8

  5. popSTR popSTR Public

    PopSTR - A Population based microsatellite genotyper

    C++ 31 9

  6. LRS_SV_sets LRS_SV_sets Public

    VCF files of SVs using long-read sequencing (LRS).

    21 2

Repositories

Showing 10 of 27 repositories
  • Stefanssonetal-Nature-Genetics-2024 Public
    DecodeGenetics/Stefanssonetal-Nature-Genetics-2024’s past year of commit activity
    R 0 MIT 0 0 0 Updated Jun 19, 2024
  • graphtyper Public

    Population-scale genotyping using pangenome graphs

    DecodeGenetics/graphtyper’s past year of commit activity
    C++ 162 MIT 20 58 0 Updated Feb 29, 2024
  • Ratatosk Public

    Hybrid error correction of long reads using colored de Bruijn graphs

    DecodeGenetics/Ratatosk’s past year of commit activity
    C++ 93 BSD-2-Clause 7 0 0 Updated Jan 10, 2024
  • popSTR Public

    PopSTR - A Population based microsatellite genotyper

    DecodeGenetics/popSTR’s past year of commit activity
    C++ 31 GPL-3.0 9 5 0 Updated Oct 23, 2023
  • gnonadd Public
    DecodeGenetics/gnonadd’s past year of commit activity
    R 1 0 0 0 Updated Sep 26, 2023
  • proteomics_comparison Public

    Supplementary code for the article "Large-scale plasma proteomics comparisons through genetics and disease associations"

    DecodeGenetics/proteomics_comparison’s past year of commit activity
    Python 2 0 0 0 Updated Aug 16, 2023
  • mDNM_analysisAndData Public

    Scripts for mDNM analysis and the data the analysis was run on.

    DecodeGenetics/mDNM_analysisAndData’s past year of commit activity
    R 1 MIT 0 0 0 Updated Aug 1, 2023
  • NCOurd Public

    Modelling Length Distributions of NCO Events and Gene Conversion Tracts

    DecodeGenetics/NCOurd’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Aug 16, 2022
  • popvcf Public

    Lossless VCF compression

    DecodeGenetics/popvcf’s past year of commit activity
    C++ 18 1 1 0 Updated Mar 4, 2022
  • LRcaller Public
    DecodeGenetics/LRcaller’s past year of commit activity
    C++ 16 3 2 0 Updated Jan 10, 2022
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