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@KChen-lab

KChen-lab

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  1. Monopogen Monopogen Public

    SNV calling from single cell sequencing

    HTML 68 16

  2. METAFlux METAFlux Public

    HTML 36 6

  3. bindSC bindSC Public

    Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and CyTOF data

    R 31 7

  4. SCMER SCMER Public

    Marker Selection by matching manifolds and elastic net

    HTML 23 4

  5. Texomer Texomer Public

    Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data

    R 20 8

  6. Cyclum Cyclum Public

    Identify circular trajectories in scRNA-seq data using an autoencoder with sinusoidal activations

    Python 19 4

Repositories

Showing 10 of 31 repositories
  • METAFlux Public
    KChen-lab/METAFlux’s past year of commit activity
    HTML 36 6 11 0 Updated Jun 29, 2024
  • Monopogen Public

    SNV calling from single cell sequencing

    KChen-lab/Monopogen’s past year of commit activity
    HTML 68 GPL-3.0 16 31 (1 issue needs help) 1 Updated Jun 23, 2024
  • KChen-lab/transition-cells-identification’s past year of commit activity
    R 2 MIT 1 0 0 Updated Mar 14, 2024
  • lad Public Forked from KChen-lab/bcd

    Visualization and analysis of single-cell RNA-seq data by alternative clustering

    KChen-lab/lad’s past year of commit activity
    Jupyter Notebook 0 2 0 0 Updated Feb 11, 2024
  • INVAX_manuscript Public

    Scripts/Codes for INVAX project paper

    KChen-lab/INVAX_manuscript’s past year of commit activity
    R 0 Apache-2.0 0 0 0 Updated Dec 23, 2023
  • SCMER Public

    Marker Selection by matching manifolds and elastic net

    KChen-lab/SCMER’s past year of commit activity
    HTML 23 MIT 4 0 0 Updated Dec 21, 2023
  • bcd Public

    Visualization and analysis of single-cell RNA-seq data by alternative clustering

    KChen-lab/bcd’s past year of commit activity
    HTML 4 2 1 0 Updated Nov 23, 2023
  • NK_CEBPD_manuscript Public

    Scripts/Codes for NK CEBPD paper

    KChen-lab/NK_CEBPD_manuscript’s past year of commit activity
    R 0 0 0 0 Updated Nov 20, 2023
  • MEDALT Public

    Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile

    KChen-lab/MEDALT’s past year of commit activity
    R 15 MIT 2 6 0 Updated Sep 8, 2023
  • bindSC Public

    Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and CyTOF data

    KChen-lab/bindSC’s past year of commit activity
    R 31 GPL-3.0 7 2 0 Updated Aug 23, 2023

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