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  1. open-cravat open-cravat Public

    A modular annotation tool for genomic variants

    JavaScript 110 27

  2. 2020plus 2020plus Public

    Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests

    Python 48 17

  3. mhcnuggets mhcnuggets Public

    MHC Class I and Class II neoantigen binding prediction

    Python 24 10

  4. bigmhc bigmhc Public

    BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity

    Jupyter Notebook 40 9

  5. pictograph pictograph Public

    A Bayesian hierarchical model to build tumor evolutionary trees

    R 3

  6. open-cravat-dxapp open-cravat-dxapp Public

    open-cravat-dxapp

    Python

Repositories

Showing 10 of 39 repositories
  • open-cravat Public

    A modular annotation tool for genomic variants

    KarchinLab/open-cravat’s past year of commit activity
    JavaScript 110 MIT 27 30 1 Updated Jul 2, 2024
  • KarchinLab/open-cravat-modules-karchinlab’s past year of commit activity
    JavaScript 0 MIT 6 1 1 Updated Jul 2, 2024
  • KarchinLab/open-cravat-readthedocs’s past year of commit activity
    Python 1 4 0 0 Updated Jun 28, 2024
  • KarchinLab/open-cravat-multiuser’s past year of commit activity
    JavaScript 2 2 1 0 Updated Jun 25, 2024
  • Tokheim_Cell_Systems_2019 Public

    Data analysis for the CHASMplus paper

    KarchinLab/Tokheim_Cell_Systems_2019’s past year of commit activity
    Jupyter Notebook 3 4 0 1 Updated Jun 3, 2024
  • pictograph Public

    A Bayesian hierarchical model to build tumor evolutionary trees

    KarchinLab/pictograph’s past year of commit activity
    R 3 0 5 1 Updated May 31, 2024
  • TCRtoolkit-Bulk Public

    A NextFlow pipeline for processing and analyzing TCRseq data

    KarchinLab/TCRtoolkit-Bulk’s past year of commit activity
    Python 0 0 0 0 Updated May 20, 2024
  • TCRtoolkit-SC Public

    A NextFlow pipeline to process, analyze, and visualize single cell TCRseq data

    KarchinLab/TCRtoolkit-SC’s past year of commit activity
    Nextflow 0 0 0 0 Updated May 18, 2024
  • open-cravat-dxapp Public

    open-cravat-dxapp

    KarchinLab/open-cravat-dxapp’s past year of commit activity
    Python 0 0 1 0 Updated May 6, 2024
  • KarchinLab/open-cravat-extras’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 29, 2024

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