SBOL designer allows you to visualize SBOL designs using SBOL visual icons, edit SBOL designs in a GUI, import genetic constructs from an SBOL parts registry, and save your design an SBOL file.
SBOLDesigner requires Java 8 to be installed on your computer. To run SBOL designer,
simply double click the jar file, which can be downloaded from https://github.com/SynBioDex/SBOLDesigner/releases. If your OS does not support running Java applications by double clicking, you can run the designer from command-line by using the java -jar <jarFileName> command at a terminal where jarFileName will be the name of the SBOL Designer jar file you
downloaded.
Comprehensive instructions for using SBOLDesigner can be found here: https://sboldesigner.github.io/
In order to build SBOLDesigner from source, type the following into a Windows shell or create an Eclipse Maven run configuration that has the following goals (excluding the "mvn") after cloning this repository: mvn clean install exec:java -Dexec.mainClass="edu.utah.ece.async.sboldesigner.sbol.editor.SBOLDesignerStandalone" && mvn package
M. Zhang, J. McLaughlin, A. Wipat, and C. Myers, SBOLDesigner 2: An Intuitive Tool for Structural Genetic Design, in ACS Synthetic Biology 6(7): 1150-1160, July 21, 2017.
See http://github.com/SynBioDex/SBOLDesigner/ for more information on SBOL designer. Send your questions and comments about SBOL Designer to michael13162@gmail.com.
For the previous version (unsupported) of SBOL Designer, see http://github.com/clarkparsia/sbol/.