Bio2BEL Phosphosite

Converts post-translational modifications and associated mutations to BEL

Installation

bio2bel_phosphosite can be installed easily from PyPI with the following code in your favorite terminal:

$ python3 -m pip install bio2bel_phosphosite

or from the latest code on GitHub with:

$ python3 -m pip install git+https://github.com/bio2bel/phosphosite.git@master

Setup

PhosphoSitePlus can be downloaded and populated from either the Python REPL or the automatically installed command line utility.

Python REPL

>>> import bio2bel_phosphosite
>>> phosphosite_manager = bio2bel_phosphosite.Manager()
>>> phosphosite_manager.populate()

Command Line Utility

bio2bel_phosphosite populate