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Updated installation instructions
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standage committed May 20, 2019
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[![MicroHapulator build status][travisbadge]](https://travis-ci.org/bioforensics/MicroHapulator)
[![Test coverage][codecovbadge]](https://codecov.io/github/bioforensics/MicroHapulator)
[![BSD licensed][licensebadge]](https://github.com/bioforensics/MicroHapDB/blob/master/LICENSE.txt)
[![install with bioconda][biocondabadge]](http://bioconda.github.io/recipes/microhapulator/README.html)

# MicroHapulator

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## Installation

Installation with bioconda is pending.
For now, install the following installation procedure is recommended.
Installation with bioconda is recommended.

```
pip install git+https://github.com/bioforensics/happer.git
pip install git+https://github.com/bioforensics/MicroHapDB.git
pip install git+https://github.com/bioforensics/MicroHapulator.git
conda install -c bioconda microhapulator
```

If you'd prefer to install with pip, see [.travis.yml](.travis.yml) and [setup.py](setup.py) for hints.


## Usage

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[travisbadge]: https://img.shields.io/travis/bioforensics/MicroHapulator.svg
[codecovbadge]: https://img.shields.io/codecov/c/github/bioforensics/MicroHapulator.svg
[licensebadge]: https://img.shields.io/badge/license-BSD-blue.svg
[biocondabadge]: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat

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