output explanations

[CamiAgustini]

Hi @linnabrown , @yinlabniu , @AaronAOliver

Thank you for this great resource! I am looking through the output of run_dbcan script and was wondering if you could guide me in the right direction.

Can you explain me the meaning of:
-Diamond: CE8+PL1+4.2.2. (is is that both are probably?)
-e-CAMI: GH120+GH51+CBM6
-HMMER: CE20(113363)+GH43_16(502812)+CBM6(837952) (what are the numers in brakets?)

[yinlabniu]

Can you let us know which output file you are referring to? A screenshot would be the best. Yanbin

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________________________________ From: CamiAgustini ***@***.***> Sent: Monday, January 8, 2024 1:06 PM To: linnabrown/run_dbcan ***@***.***> Cc: Yanbin Yin ***@***.***>; Mention ***@***.***> Subject: [linnabrown/run_dbcan] output explanations (Issue #148) Non-NU Email

________________________________ Hi @linnabrown<https://urldefense.com/v3/__https://github.com/linnabrown__;!!PvXuogZ4sRB2p-tU!GBpPqSK9W5wIEczdCzNknjyosGkQLi-Q__rgZyCr8Ha2bfNp-u-QtZhcjiPUEey7BZ6E-h-JZ3jfNv31XuUGjQ$> , @yinlabniu<https://urldefense.com/v3/__https://github.com/yinlabniu__;!!PvXuogZ4sRB2p-tU!GBpPqSK9W5wIEczdCzNknjyosGkQLi-Q__rgZyCr8Ha2bfNp-u-QtZhcjiPUEey7BZ6E-h-JZ3jfNv2yGYbALg$> , @AaronAOliver<https://urldefense.com/v3/__https://github.com/AaronAOliver__;!!PvXuogZ4sRB2p-tU!GBpPqSK9W5wIEczdCzNknjyosGkQLi-Q__rgZyCr8Ha2bfNp-u-QtZhcjiPUEey7BZ6E-h-JZ3jfNv1bSFc4ag$> Thank you for this great resource! I am looking through the output of run_dbcan script and was wondering if you could guide me in the right direction. Can you explain me the meaning of: -Diamond: CE8+PL1+4.2.2. (is is that both are probably?) -e-CAMI: GH120+GH51+CBM6 -HMMER: CE20(113363)+GH43_16(502812)+CBM6(837952) (what are the numers in brakets?) — Reply to this email directly, view it on GitHub<https://urldefense.com/v3/__https://github.com/linnabrown/run_dbcan/issues/148__;!!PvXuogZ4sRB2p-tU!GBpPqSK9W5wIEczdCzNknjyosGkQLi-Q__rgZyCr8Ha2bfNp-u-QtZhcjiPUEey7BZ6E-h-JZ3jfNv0G9dpiHg$>, or unsubscribe<https://urldefense.com/v3/__https://github.com/notifications/unsubscribe-auth/AEXNKZRTZS5SOXSV4HKPCKLYNQ7TVAVCNFSM6AAAAABBR5ZIX2VHI2DSMVQWIX3LMV43ASLTON2WKOZSGA3TCMBVGU4TANQ__;!!PvXuogZ4sRB2p-tU!GBpPqSK9W5wIEczdCzNknjyosGkQLi-Q__rgZyCr8Ha2bfNp-u-QtZhcjiPUEey7BZ6E-h-JZ3jfNv1lPl2OHQ$>. You are receiving this because you were mentioned.Message ID: ***@***.***> H

[CamiAgustini]

Hi Yanbin, Thank you for your message. Apologies for any confusion. I am referring to the output file generated during the data analysis process. Attached is a screenshot for clarity. [image: dbCAN2.png] [image: dbCAN.png] Feel free to reach out if you have further questions or need more information. El lun, 8 ene 2024 a la(s) 4:10 p.m., Yanbin Yin ***@***.***) escribió:

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Can you let us know which output file you are referring to? A screenshot would be the best. Yanbin ________________________________ From: CamiAgustini ***@***.***> Sent: Monday, January 8, 2024 1:06 PM To: linnabrown/run_dbcan ***@***.***> Cc: Yanbin Yin ***@***.***>; Mention ***@***.***> Subject: [linnabrown/run_dbcan] output explanations (Issue #148) Non-NU Email ________________________________ Hi @linnabrown< https://urldefense.com/v3/__https://github.com/linnabrown__;!!PvXuogZ4sRB2p-tU!GBpPqSK9W5wIEczdCzNknjyosGkQLi-Q__rgZyCr8Ha2bfNp-u-QtZhcjiPUEey7BZ6E-h-JZ3jfNv31XuUGjQ$> , @yinlabniu< https://urldefense.com/v3/__https://github.com/yinlabniu__;!!PvXuogZ4sRB2p-tU!GBpPqSK9W5wIEczdCzNknjyosGkQLi-Q__rgZyCr8Ha2bfNp-u-QtZhcjiPUEey7BZ6E-h-JZ3jfNv2yGYbALg$> , @AaronAOliver< https://urldefense.com/v3/__https://github.com/AaronAOliver__;!!PvXuogZ4sRB2p-tU!GBpPqSK9W5wIEczdCzNknjyosGkQLi-Q__rgZyCr8Ha2bfNp-u-QtZhcjiPUEey7BZ6E-h-JZ3jfNv1bSFc4ag$> Thank you for this great resource! I am looking through the output of run_dbcan script and was wondering if you could guide me in the right direction. Can you explain me the meaning of: -Diamond: CE8+PL1+4.2.2. (is is that both are probably?) -e-CAMI: GH120+GH51+CBM6 -HMMER: CE20(113363)+GH43_16(502812)+CBM6(837952) (what are the numers in brakets?) — Reply to this email directly, view it on GitHub< https://urldefense.com/v3/__https://github.com/linnabrown/run_dbcan/issues/148__;!!PvXuogZ4sRB2p-tU!GBpPqSK9W5wIEczdCzNknjyosGkQLi-Q__rgZyCr8Ha2bfNp-u-QtZhcjiPUEey7BZ6E-h-JZ3jfNv0G9dpiHg$>, or unsubscribe< https://urldefense.com/v3/__https://github.com/notifications/unsubscribe-auth/AEXNKZRTZS5SOXSV4HKPCKLYNQ7TVAVCNFSM6AAAAABBR5ZIX2VHI2DSMVQWIX3LMV43ASLTON2WKOZSGA3TCMBVGU4TANQ__;!!PvXuogZ4sRB2p-tU!GBpPqSK9W5wIEczdCzNknjyosGkQLi-Q__rgZyCr8Ha2bfNp-u-QtZhcjiPUEey7BZ6E-h-JZ3jfNv1lPl2OHQ$>. You are receiving this because you were mentioned.Message ID: ***@***.***> H — Reply to this email directly, view it on GitHub <#148 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/BFGFFF72NTKTXWXKH5T4NFLYNRABLAVCNFSM6AAAAABBR5ZIX2VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQOBRGY3TANRTGU> . You are receiving this because you authored the thread.Message ID: ***@***.***>

[linnabrown]

We already replaced the eCAMI with dbcan_sub for one year. Please update the new version for our dbcan tool. Thank you very much!