This tool is designed to scan all positions on a gene than can be used to specifically cut one DNA strand using a given cas9.
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Updated
Feb 13, 2024 - Shell
This tool is designed to scan all positions on a gene than can be used to specifically cut one DNA strand using a given cas9.
A theoretical Informatic Model that could explain How Crispr Cas 9 Works
Biotechnology project about possible side effects and consequences of CRISPR
Base functions and classes for CRISPR gRNA design
Script used to cdesign sgRNA sequences based on desired input parameters comparing different web-based tools
This repo contains computational analysis performed in Li21.
Cell lineage tree estimation via Star Homoplasy parsimony; also applicable to Camin-Sokal parsimony with binary characters
CRISPR-Cas9 Excision Therapy Suitability
CRISPR sgRNA design for the Genetic Perturbation Platform at the Broad Institute
Useful human and mouse data for the crisprVerse ecosystem
An efficient tool for CRISPR experiment design
Prediction of protein-protein interaction between anti-crispr protein (acr) and CRISPR-associated (cas) protein using machine learning algorithm
BWA-based alignment of CRISPR gRNA spacer sequences
A multi-source ensemble predictor for prioritizing sgRNAs in CRISPR/Cas9 protein knockouts
Pip package for CRISPR-Cas9 screen analysis
A Bayesian hierarchical model to discover tissue-specific cancer driver genes and synthetic lethal interactions from CRISPR/Cas9 LoF screens.
Code for "Comprehensive computational analysis of epigenetic descriptors affecting CRISPR-Cas9 off-target activity"
A reference-free statistical approach to diversity-generating & mobile genetic element discovery
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