Python tool to merge cross-species Illumina iScan genotype data with a reference set of genotypes from a pre-existing source.
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Updated
May 26, 2022 - Python
Python tool to merge cross-species Illumina iScan genotype data with a reference set of genotypes from a pre-existing source.
workflow that generates genotype fingerprints consumed by SampleFingerprinting workflow
📢🎯 Generic typing tool from amplicons and/or in silico PCR
Joint Genotyping in MIT Fraenkel Lab with ALS Genomics + 1000 Genomes Data
Running codes and data analysis scripts for SNP array comparison paper
Training material for the use of Germinate
Graduation Project (2023)
This project was written as a first step to apply the ddRADSeq genotyping method to prokaryota. This code is made to dertemine, in silico, the couple of enzymes to apply on a given sequence.
TFM_AliciaAranda_Pipeline
Wrapper scripts for TASSEL (Trait Analysis by aSSociation, Evolution and Linkage) and UNEAK (Universal Network Enabled Analysis Kit) v3.0 Genotyping by Sequencing (GBS) analysis pipelines
Repository for workshop study projects in Bioinformatics Institute 2023-2024
Analyses of Penter, Borji & Nagler et al., 2023
genotype prepare for sequencing paltform.
Methylation and mqtl analysis of the developing knee
Data repository for the paper of the same name.
Perl software to cluster SNPs based on its genotype.
Benchmarking variant callers for long read data
Pipelines creating allelic presence-absence matrices from SRST2 and ARIBA results
R 📦 providing classes and functions to simulate breeding schemes.
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