ngs
Here are 69 public repositories matching this topic...
bcftools singularity container
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Nov 8, 2018 - Shell
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Jun 24, 2022 - Shell
A pipeline for preprocessing and annotation of NGS immunoglobulin repertoire data.
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Feb 9, 2023 - Shell
Research project undertaken in Computational Genomics at the University of Pittsburgh. with Dr. Miler Lee and students to understand Maternal-to-Zygotic transition in Xenopus laevis
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Oct 22, 2022 - Shell
This programme takes advantage of Stacks to analyze NGS data. We have successfully processed NGS data for Brassicacae plants and Triticum aestivum L.
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May 7, 2024 - Shell
Variant annotation and filtration server ALAPY Genome Explorer
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May 22, 2017 - Shell
Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.
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Aug 28, 2020 - Shell
Set of scripts to process RAD-Seq HTS data on computing grids like MetaCentrum.
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May 17, 2022 - Shell
A pipeline utilizing PCA on 1000 genomes and WGS data from your own samples to determine or validate ancestry of an individual.
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Aug 16, 2023 - Shell
WIP & POC: Count Viral and other non-human genome signatures in Human NGS data
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Aug 15, 2017 - Shell
This pipeline processes high-throughput sequencing data (PE/SE) through QC,trim/filter,alignment,counting etc via sequential stages, with individual samples run in parallel via submission to a Slurm queue.
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May 7, 2024 - Shell
A free and easy-to-use pipeline to analyse data from ancient NCR-mtDNA sequences obtained by amplicon-based NGS methods
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May 30, 2024 - Shell
One-stop shop for one-click NGS analyses from the command-line
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Oct 12, 2017 - Shell
Accel Amplicon HS wMID
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Oct 3, 2018 - Shell
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