Official code repository for GATK versions 4 and up
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Updated
Jul 1, 2024 - Java
Official code repository for GATK versions 4 and up
Rust crates for working with Workflow Description Language (WDL) documents.
Application for analysis of targeted metagenomics sequencing data. Intended for use with multiplexed Illumina short-read data generated after enrichment.
Java utilities for Bioinformatics
Data intensive science for everyone.
A Similarity-Guided Alignment Algorithm
UGENE is free open-source cross-platform bioinformatics software
Read specialized NGS formats as data frames in R, Python, and more.
A collection of Galaxy-related training material
A short tandem repeat (STR) genotyping and analysis toolkit for long reads
A collection of various tools useful for the deep analysis of data generated via the CRSSANT/rna2d3d pipeline.
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
Portable database of microhaplotype marker and allele frequency data
Tools for empirical microhaplotype calling, forensic interpretation, and simulation.
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
a tool to identify species and inter-species hybrids and chromosome copy number variants from high-throughput sequencing data
Exon is an OLAP query engine specifically for biology and life science applications.
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