Python library to work with PLINK files.
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Updated
Mar 19, 2021 - Python
Python library to work with PLINK files.
BIOI500 - Advanced Bioinformatics final project at Loyola University Chicago.
Introduction to Human Population Genetics
This project leverages PLINK for GWAS Quality Control, focusing on SNP analysis and PCA for ancestry insights, showcasing the vital role of bioinformatics in enhancing population genetics research.
esohinformatics
Fast and minimal PLINK file processing with numba
Very basic Snakemake workflow
Smarter database repository
Genetic Ancestry
A python script to remove duplicate snps from plink files and recode the resultant files into plink binaries free of duplicate snps
The CGR GWAS QC processing workflow.
A modification to Sikora's admixr to make it more accesible
Genomics Commons
A nextflow pipeline for Current Effective Population Size (Ne) calculations with bootstrapping
So, ansible is some pretty fucked code. It's got some really bad hacks, and the authors didn't understand that python offers some elegant and portable ways of doing some of the things that they do. Anyways, this is my port of ansible to native windows. It uses plink.exe for doing ssh connections, so put that somewhere in your path. You're welcom…
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