Convert Stockholm alignments as output by HMMER to cigar strings
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Updated
Nov 22, 2018 - Python
Convert Stockholm alignments as output by HMMER to cigar strings
Find NLR hmms in protein sequences.
MetAnnotate is a tool and web application for taxonomic profiling of shotgun metagenomes.
Snakemake pipeline for searching genomic sequences for those encoding proteins containing domains of choice
Predicts subplastid localization of proteins along with sequence origin (plastid- or nuclear-encoded).
HMMER-based microcin search using full microcin sequences and double-glycine signal region.
Sets of protein familes represented as profile HMMs annotated for antibiotic resistance and virulence function.
An ML-based predictor of GPCR/G-protein couplings using only sequence information
A lightweight rewrite of run_dbcan for better multithread performance
Create HMMs from KEGG orthologs
Query sequence database by HMMs arranged in predefined synteny structure
basic visualization of hmm profile matches to multiple fasta files
This repository contains the code used for screening putative extracellular Contractile Injection System (eCIS) loci from genomic sequences.
A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.
Django website project for common sequence search tools.
A Pure-Python parser of HMMER3 output
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