A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.
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Updated
Jul 5, 2024 - HTML
A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.
Cython bindings and Python interface to HMMER3.
A lightweight rewrite of run_dbcan for better multithread performance
HMMER-based microcin search using full microcin sequences and double-glycine signal region.
Find NLR hmms in protein sequences.
This repository contains the code used for screening putative extracellular Contractile Injection System (eCIS) loci from genomic sequences.
A package to annotate protein sequences
Query sequence database by HMMs arranged in predefined synteny structure
Snakemake pipeline for searching genomic sequences for those encoding proteins containing domains of choice
Predicts subplastid localization of proteins along with sequence origin (plastid- or nuclear-encoded).
Django website project for common sequence search tools.
Annotate DNA sequences for Gene Ontology terms
An ML-based predictor of GPCR/G-protein couplings using only sequence information
Sets of protein familes represented as profile HMMs annotated for antibiotic resistance and virulence function.
Convert Stockholm alignments as output by HMMER to cigar strings
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